DNA from deep-sea polychaete - SRA

SRX14403408: DNA from deep-sea polychaete
1 ILLUMINA (Illumina MiSeq) run: 24,032 spots, 11.7M bases, 5.8Mb downloads

Design: Sample was stored in 90% ethanol. DNA was extracted using a Qiagen DNeasy kit. Preparation for sequencing of the 16S rRNA gene was carried out according to the Earth Microbiome Project protocol (Caporaso et al., 2011; Caporaso et al., 2012) with modifications as previously described (Case et al., 2015). Raw sequences were generated on an Illumina MiSeq platform at Laragen, Inc. (Los Angeles, CA, USA).

Submitted by: Occidental College

Study: A dynamic and persistent epibiont community associated with the deep-sea annelid Osedax

PRJNA813533 • SRP362947 • All experiments • All runs

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Using a 14-year study, we reveal a dynamic, yet persistent, succession of the Osedax epibiome over time as the whale carcass degrades on the sea floor.

Sample: 13_ros_1018m_T916.2

SAMN26506744 • SRS12213515 • All experiments • All runs

Organism: whale fall metagenome

Library:

Name: 13_ros_1018m_T916.2

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 24,032 spots, 11.7M bases, 5.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR18265062	24,032	11.7M	5.8Mb	2022-03-07

ID:: 20487461

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